The English courses are mainly offered in Master and Doctorate degree programs
- 海運暨管理學院 College of Maritime Science and Management
- 商船學系 Department of Merchant Marine
- 航運管理學系 Department of Shipping and Transportation Management
- 運輸科學系 Department of Transportation Science
- 輪機工程學系 Department of Marine Engineering
- 海洋經營管理學士學位學程 Bachelor Degree Program in Ocean Business Management
- 海洋觀光管理學士學位學程 Bachelor Degree Program in Ocean Tourism Management
- 生命科學院 College of Life Sciences
- 食品科學系 Department of Food Science
- 水產養殖學系 Department of Aquaculture
- 生命科學暨生物科技學系 Department of Bioscience and Biotechnology
- 海洋生物研究所 Institute of Marine Biology
- 食品安全與風險管理研究所 Institute of Food Safety and Risk Management
- 海洋生物科技博士學位學程 Doctoral Degree Program in Marine Biotechnology
- 海洋生物科技學士學位學程 Bachelor Degree Program in Marine Biotechnology
- 海洋生物科技及環境生態永續國際學分學程 International Master Program in Marine Biotechnology and Environmental Ecology Sustainability
- 海洋科學與資源學院 College of Ocean Science and Resource
- 環境生物與漁業科學學系 Department of Environmental Biology and Fisheries Science
- 海洋環境資訊系 Department of Marine Environmental Informatics
- 地球科學研究所 Institute of Earth Sciences
- 海洋事務與資源管理研究所 Institute of Marine Affairs and Resource Management
- 海洋環境與生態研究所Institute of Marine Environment and Ecology
- 海洋資源與環境變遷博士學位學程 Doctoral Degree Program in Ocean Resource and Environmental Changes
- 工學院 College of Engineering
- 機械與機電工程學系 Department of Mechanical and Mechatronic Engineering
- 系統工程暨造船學系 Department of Systems Engineering and Naval Architecture
- 河海工程學系 Department of Harbor and River Engineering
- 海洋工程科技博士學位學程 Doctoral Degree Program in Ocean Engineering and Technology
- 海洋工程科技學士學位學程 Bachelor Degree Program in Ocean Engineering and Technology